Mooshammer M, Kitzinger K, Schintlmeister A, Ahmerkamp S, Nielsen JL, Nielsen PH, Wagner M (2021). Flow-through stable isotope probing (Flow-SIP) minimizes cross-feeding in complex microbial communities. ISME J 15: 348-353.

Kotov V, Mlynek G, Vesper O, Pletzer M, Wald J, Teixeira-Duarte CM, Celia H, Garcia-Alai M, Nussberger S, Buchanan SK, Morais-Cabral JH, Loew C, Djinovic-Carugo K, Marlovits TC (2021). In-depth interrogation of protein thermal unfolding data with MoltenProt. Protein Sci 30: 201-217.

Mueller AJ, Jung MY, Strachan CR, Herbold CW, Kirkegaard RH, Wagner M, Daims H (2020). Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting. ISME J, in press.

Daebeler A, Kitzinger K, Koch H, Herbold CW, Steinberger M, Schwarz J, Zechmeister T, Karst S, Albertsen M, Nielsen PH, Wagner M, Daims H (2020). Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira. ISME J 14: 2967-2979.

Séneca J, Pjevac P, Canarini A, Herbold CW, Zioutis C, Dietrich M, Simon E, Prommer J, Bahn M, Pötsch EM, Wagner M, Wanek W, Richter A (2020). Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought. ISME J 14: 3038–3053.

Lukumbuzya M, Kristensen JM, Kitzinger K, Pommerening-Roser A, Nielsen PH, Wagner M, Daims H, Pjevac P (2020). A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria. Water Res 186: 116372.

Pfanzagl V, Beale JH, Michlits H, Schmidt D, Gabler T, Obinger C, Djinovic-Carugo K, Hofbauer S (2020). X-ray-induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner. J Biol Chem 295: 13488-13501.

Yang Y, Daims H, Liu Y, Herbold CW, Pjevac P, Lin JG, Li M, Gu JD (2020). Activity and metabolic versatility of complete ammonia oxidizers in full-scale wastewater treatment systems. mBio 11: e03175-19.

Kitzinger K, Marchant HK, Bristow LA, Herbold CW, Padilla CC, Kidane AT, Littmann S, Daims H, Pjevac P, Stewart FJ, Wagner M, Kuypers MMM (2020). Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean. Nat Commun 11: 767.

Zajc CU, Dobersberger M, Schaffner I, Mlynek G, Puhringer D, Salzer B, Djinovic-Carugo K, Steinberger P, De Sousa Linhares A, Yang NJ, Obinger C, Holter W, Traxlmayr MW, Lehner M (2020). A conformation-specific ON-switch for controlling CAR T cells with an orally available drug. Proc Natl Acad Sci USA 117: 14926-14935.

Sedlacek CJ, Giguere AT, Dobie MD, Mellbye BL, Ferrell RV, Woebken D, Sayavedra-Soto LA, Bottomley PJ, Daims H, Wagner M, Pjevac P (2020). Transcriptomic response of Nitrosomonas europaea transitioned from ammonia- to oxygen-limited steady-state growth. mSystems 5: e00562-19.

Werning M, Mullner EW, Mlynek G, Dobretzberger V, Djinovic-Carugo K, Baron DM, Prokisch H, Buchner B, Klopstock T, Salzer U (2020). PKAN neurodegeneration and residual PANK2 activities in patient erythrocytes. Ann Clin Transl Neurol 7: 1340-1351.

Han P, Yu Y, Zhou L, Tian Z, Li Z, Hou L, Liu M, Wu Q, Wagner M, Men Y (2019). Specific micropollutant biotransformation pattern by the comammox bacterium Nitrospira inopinata. Environ Sci Technol 15: 8695-8705.

Mlynek G, Kostan J, Leeb S, Djinović-Carugo K (2019). Tailored suits fit better: Customized protein crystallization screens. Cryst Growth Des 20: 984-994.

Jung MY, Gwak JH, Rohe L, Giesemann A, Kim JG, Well R, Madsen EL, Herbold CW, Wagner M, Rhee SK (2019). Indications for enzymatic denitrification to N2O at low pH in an ammonia-oxidizing archaeon. ISME J 13: 2633-2638.

Zhou LJ, Han P, Yu Y, Wang B, Men Y, Wagner M, Wu QL (2019). Cometabolic biotransformation and microbial-mediated abiotic transformation of sulfonamides by three ammonia oxidizers. Water Res 159: 444-453.

Kits KD, Jung M-Y, Vierheilig J, Pjevac P, Sedlacek CJ, Liu S, Herbold CW, Stein LY, Richter A, Wissel H, Brüggemann N, Wagner M, Daims H (2019). Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata. Nat Commun 10:1836.

Lee KS, Palatinszky M, Pereira FC, Nguyen J, Fernandez VI, Mueller AJ, Menolascina F, Daims H, Berry D, Wagner M, Stocker R (2019). An automated Raman-based platform for the sorting of live cells by functional properties. Nat Microbiol 4:1035-1048.

Lukumbuzya M, Schmid M, Pjevac P, Daims H (2019). A multicolor fluorescence in situ hybridization approach using an extended set of fluorophores to visualize microorganisms. Front. Microbiol. 10: 1383.

Kits KD, Sedlacek CJ, Lebedeva EV, Han P, Bulaev A, Pjevac P, Daebeler A, Romano S, Albertsen M, Stein LY, Daims H, Wagner M (2017). Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle. Nature 549:269-272.

Pjevac P, Schauberger C, Poghosyan L, Herbold CW, van Kessel MAHJ, Daebeler A, Steinberger M, Jetten MSM, Lücker S, Wagner M, Daims H (2017). AmoA-targeted polymerase chain reaction primers for the specific detection and quantification of comammox Nitrospira in the environment. Front. Microbiol. 8:1508.

Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, Jehmlich N, Palatinszky M, Vierheilig J, Bulaev A, Kirkegaard RH, von Bergen M, Rattei T, Bendinger B, Nielsen PH, Wagner M (2015). Complete nitrification by Nitrospira bacteria. Nature 528: 504-509.


(*) Publications prior to June 2018 predate the Comammox Research Platform.